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7 Facts You Never Knew About Merle Chihuahuas

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One of the most unique aspects of Chihuahuas as a dog breed is the wild variation between different pups. Some Chihuahuas are short-haired, some are long-haired, some may have different head shapes, and some may even be blue!

Many potential chi-owners seek rare color and marking combinations when looking for a new Chihuahua, and Merle Chihuahuas are among the most distinct and sought-after coat patterns.

Check out our main post that showcases all our Chihuahua fact articles!

Merle, known sometimes as “ dapple ” in other breeds, refers to a spotted or mottled coat pattern. The pattern extends to the dog’s base coat and skin. However, there is far more to Merle Chihuahuas than meets the eye.

In this article, we will break down everything that you never knew about Merle Chihuahuas, from the trait’s spotty history to the current controversy surrounding the pattern. Let’s count down seven facts that you never knew about Merle Chihuahuas.


2 beautiful coated merle chihuahuas

When it comes to the Chihuahua breed, Merle is not just a beautiful and unique coat pattern. Merle is actually a gene modifier. In layman’s terms, a gene modifier is a gene that affects how other genes express themselves.

This means that the Merle gene affects more than just coat color. Often, the Merle gene affects the dog’s skin pigment, resulting in light and dark spots beneath the coat. Likewise, the gene can even affect eye color.


blue eyed merle chihuahua

Yes, you read that correctly. Some Merle Chihuahuas have blue eyes, and some have one blue eye only.

This phenomenon is called heterochromia. A Chihuahua with one or more blue eyes will have an increased sensitivity to sunlight.

Unfortunately, the Merle gene modifier also causes some undesired health issues.

Merle Chihuahuas are more likely to develop hearing and vision problems. These issues will be present when the pup is born and will not improve as he or she ages.

The light pigmentation of a Merle Chihuahua’s skin makes them more susceptible to sunburns and ultraviolet radiation.

Because of this, it is easier for a Merle Chihuahua to contract skin cancer than a standard Chihuahua.


closeup merle pup with blue eyes

There is a debate in the Merle Chihuahua community over how long the gene has existed in Chihuahuas.

Some parties trace the gene back 70 years to the 1940s, but others conclude that the Merle color gene has only been present in Chihuahuas for the past 15 years.

The trouble with this debate is the lack of literature on Merle Chihuahuas. There are little to no scientific articles dating the emergence of the pattern.

However, the general consensus is that Merles have been present for the last 70 years.

Merle great dane and chihuahua looking at each other


It appears that sometime in the 1940s, the Merle gene was bred into a line of Chihuahuas.

The Merle color gene appears in many breeds naturally, such as dachshunds, Australian Shepherds, and Great Danes.

Many believe that because there are no records of Merle Chihuahuas before the 1940s, the Merle gene was bred into the line by crossbreeding a Chihuahua with a breed known for the trait.


short hair merle chihuahua

Up until 2010, the Merle Chihuahua was considered purebred and was eligible for show.

However, in June 2010, the Canadian Kennel Club and the UK Kennel Club stopped recognizing Merle Chihuahuas as purebred. As a result, Merle Chihuahuas can no longer be registered with these groups.

The American Kennel Club still allows Merle Chihuahua dogs to be registered with them, depending on a few factors.

The Chihuahua Club of America issued this statement on Merle Chihuahuas.

They still allow the registering of Merles, but “due to the number  of colors and patterns occurring in the Chihuahua breed, the ethical breeding of the Merle pattern can be much more difficult than in other breeds who limit the allowed colors and patterns.”

In other words, they will still register Merle Chihuahuas, but they think there are more ethical breeds that a potential Chihuahua owner could adopt instead.


long haired merle puppy

For the sake of ethical breeding practices, two Merle Chihuahuas should never be bred together to produce Merle puppies. Breeding two Merle Chihuahuas together result in a litter of “double Merles.” Double Merles will always suffer from eye and ear issues, and some will have shorter lifespans than a normal Chihuahua.

If you would like to breed your Merle Chihuahua, do so with a standard Chihuahua.

The Merle gene is dominant, meaning that roughly half of the puppies per litter will be Merle. The Merle gene shows up the best on black-and-tan, solid black, chocolate, and blue coats.


3 chihuahua puppies

When a Merle Chihuahua is bred with a cream or sable-colored Chihuahua, their litter may contain ghost Merles. Ghost Merles, otherwise known as hidden or cryptic Merles, carry the Merle gene but don’t display the Merle coat pattern.

Pet owners cannot tell that their ghost Merle is a Merle Chihuahua at all. If the ghost Merle is bred with another Merle accidentally, the double Merle litter will be stuck with nasty health issues.

Therefore, if you suspect your Chihuahua may be a ghost Merle, you should have him or she genetically tested.

If you can register your ghost Merle Chihuahua, you should indicate that the Chihuahua is Merle, even if he or she has barely visible or no markings.

Doing so ensures that you are being an ethical Chihuahua owner and that you are taking responsibility for your Chihuahua’s unique trait.

Do Merle Chihuahuas Have Health Problems?

A Chihuahua with blue eyes will undoubtedly have an increased sensitivity to sunlight. The Merle gene modifier also results in other undesired health issues for this breed of Chihuahua as well. For example, these Chihuahuas are far more likely than other breeds and types to develop hearing and vision problems.

Do Merle Chihuahuas Require More Attention?

Chihuahuas, in general, are considered needy dogs, so the same applies to Merle Chihuahuas as well. They enjoy attention, being pet, and being played with. This has a lot to do with their hyperactive personalities.

What Is a Blue Chihuahua?

A blue Chihuahua is simply a Chihuahua that is just another color. Breeding a Blue Chihuahua is very difficult because the gene with the color is recessive. So, the dominant genes take over. So, it is very rare to have a Chihuahua puppy that has a full blue coat.

Why Is a Merle Chihuahua Controversial?

The Merle Chihuahua is so controversial not because of its beautiful color pattern but because of how the Chihuahua is bred to achieve that pattern. The Chihuahua does not have M (merle), and all Chihuahuas should have MM (non-merle). The president of the Australian Shepherd Health & Genetics Institute says, “the merle gene is not one that mutates spontaneously from the normal, non-merle version with any frequency.”

How is Merle Inherited in the Chihuahua Dog Breed?

Merle is simply a genetic pattern that is in a dog’s coat. The Merle gene is responsible for creating mottled patches of color in a solid coat along with blue eyes or odd-colored eyes. The gene can also affect the dog’s skin pigment as well.

What Does the Kennel Club Say About Merle Chihuahuas?

The Kennel Club definitely has a position when it comes to the Merle Chihuahua. Merle is sometimes considered an undesirable color within the Chihuahua dog breed. For this reason, the Kennel Club will no longer allow a dog owner to register a Merle Chihuahua if there is no documented evidence of the color being well-established over a sustained period of time. There are only certain breeds that they will accept Merle registrations for. As we stated above, the American Kennel Club does believe that there are Merle breeds that are more ethical.


merle chihuahua

The history and dialogue surrounding Merle Chihuahuas are just as compelling as their stunning coat patterns.

If your furry best friend happens to be Merle, consider yourself blessed! At the end of the day, all that matters is the adorable little Chihuahua curled up next to you.

Lenora Palminteri

Monday 3rd of May 2021

I had a beautiful female merle Chihuahua who unfortunately passed away from heart problems this past March. Her name was Hope, and she was only 8 years and 5 months when she died. I miss her very much! Since health problems are mentioned, I wonder if heart issues are also prevalent in the merle trait?!


Monday 3rd of May 2021

Chihuahuas, in general tend to have heart problems. I don't think the merle gene causes it.

Sally McGinnis

Friday 5th of February 2021

There is no evidence of more problems with a Merle Chihuahua as long as it is a Merle and not a Double Merle . !! Your article gives that false impression to people who do not know better .! You should correct this false information Sally McGinnis


Wednesday 10th of February 2021

Hmm, that's not what my research shows. There is a chance of problems with any Merle but much more likely with a double merle.

Paul Anthony Ransom

Saturday 30th of January 2021

Hi People we just got a boy Blue Merle long haired puppy Hunter he has 1 blue eye. The Breeder told us he would be registered and he was quite a bit more than the other short haired puppy supposedly from the same litter. Our Friend who introduced us to the Breeder also has an adult male with a similar Merle Coat! I feel like the breeder mislead us on the puppy. She said she will soon supply his papers. We took her on her word not thinking to research this breed. I am worried about hunter being predisposed to eye and ear problems due to him being Merle? I am not happy that she asked for more $ for him basing it on the fact that he would come with papers. Especially since our Friend with the other Merle dog paid a lot less she said because he did not come with papers! He is an amazing adorable looking puppy! This is our very first small breed dog and first Chihuahua. Just before getting him we had fostered a Shihtzu. She was a handful and we got her in line then suddenly the Family took her back which broke our hearts. I am happy to have discovered this Group. Please share with us any feed back or advice from any other Merle Chihuahua owners! Our little guy is 10 was old and we just picked him up yesterday! He is Beautiful and we are hoping for a great Family Pet. We would appreciate hearing from any other Merle Chihuahua owners! Paul R & Hunter Puppy


Monday 1st of February 2021

Some breeders do charge more for merles because they are so unusual and striking. Most likely your little guy will be healthy, you just need to be aware of what medical issues can happen. I would limit his time outside on sunny days.


Sunday 10th of January 2021

I got a a blue long hair deer head she is 7 months old and extremely smart was house broke in a month she is a awesome pup she gets along with my 3 other long hairs would trade her for anything


Sunday 10th of January 2021

She sounds wonderful John. What do you think helped her to get housetrained so quickly?

jocelyn orosco

Saturday 19th of December 2020

i have a question is there a cryptic eye in a merle chihuahua and if yes what does it mean

Mark Yalch

Thursday 15th of April 2021

@jocelyn orosco, this may help


Monday 21st of December 2020

I'm not an expert on Merles Jocelyn but I haven't heard of cryptic eye in merles.