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7 Facts You Never Knew About Merle Chihuahuas

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One of the most unique aspects of Chihuahuas as a dog breed is the wild variation between different pups. Some Chihuahuas are short-haired, some are long-haired, some may have different head shapes, and some may even be blue!

Many potential chi-owners seek rare color and marking combinations when looking for a new Chihuahua, and Merle Chihuahuas are among the most distinct and sought-after coat patterns.

Check out our main post that showcases all our Chihuahua fact articles!

Merle, known sometimes as “ dapple ” in other breeds, refers to a spotted or mottled coat pattern. The pattern extends to the dog’s base coat and skin. However, there is far more to Merle Chihuahuas than meets the eye.

In this article, we will break down everything that you never knew about Merle Chihuahuas, from the trait’s spotty history to the current controversy surrounding the pattern. Let’s count down seven facts that you never knew about Merle Chihuahuas.


2 beautiful coated merle chihuahuas

When it comes to the Chihuahua breed, Merle is not just a beautiful and unique coat pattern. Merle is actually a gene modifier. In layman’s terms, a gene modifier is a gene that affects how other genes express themselves.

This means that the Merle gene affects more than just coat color. Often, the Merle gene affects the dog’s skin pigment, resulting in light and dark spots beneath the coat. Likewise, the gene can even affect eye color.


blue eyed merle chihuahua

Yes, you read that correctly. Some Merle Chihuahuas have blue eyes, and some have one blue eye only.

This phenomenon is called heterochromia. A Chihuahua with one or more blue eyes will have an increased sensitivity to sunlight.

Unfortunately, the Merle gene modifier also causes some undesired health issues.

Merle Chihuahuas are more likely to develop hearing and vision problems. These issues will be present when the pup is born and will not improve as he or she ages.

The light pigmentation of a Merle Chihuahua’s skin makes them more susceptible to sunburns and ultraviolet radiation.

Because of this, it is easier for a Merle Chihuahua to contract skin cancer than a standard Chihuahua.


closeup merle pup with blue eyes

There is a debate in the Merle Chihuahua community over how long the gene has existed in Chihuahuas.

Some parties trace the gene back 70 years to the 1940s, but others conclude that the Merle color gene has only been present in Chihuahuas for the past 15 years.

The trouble with this debate is the lack of literature on Merle Chihuahuas. There are little to no scientific articles dating the emergence of the pattern.

However, the general consensus is that Merles have been present for the last 70 years.

Merle great dane and chihuahua looking at each other


It appears that sometime in the 1940s, the Merle gene was bred into a line of Chihuahuas.

The Merle color gene appears in many breeds naturally, such as dachshunds, Australian Shepherds, and Great Danes.

Many believe that because there are no records of Merle Chihuahuas before the 1940s, the Merle gene was bred into the line by crossbreeding a Chihuahua with a breed known for the trait.


short hair merle chihuahua

Up until 2010, the Merle Chihuahua was considered purebred and was eligible for show.

However, in June 2010, the Canadian Kennel Club and the UK Kennel Club stopped recognizing Merle Chihuahuas as purebred. As a result, Merle Chihuahuas can no longer be registered with these groups.

The American Kennel Club still allows Merle Chihuahua dogs to be registered with them, depending on a few factors.

The Chihuahua Club of America issued this statement on Merle Chihuahuas.

They still allow the registering of Merles, but “due to the number  of colors and patterns occurring in the Chihuahua breed, the ethical breeding of the Merle pattern can be much more difficult than in other breeds who limit the allowed colors and patterns.”

In other words, they will still register Merle Chihuahuas, but they think there are more ethical breeds that a potential Chihuahua owner could adopt instead.


long haired merle puppy

For the sake of ethical breeding practices, two Merle Chihuahuas should never be bred together to produce Merle puppies. Breeding two Merle Chihuahuas together result in a litter of “double Merles.” Double Merles will always suffer from eye and ear issues, and some will have shorter lifespans than a normal Chihuahua.

If you would like to breed your Merle Chihuahua, do so with a standard Chihuahua.

The Merle gene is dominant, meaning that roughly half of the puppies per litter will be Merle. The Merle gene shows up the best on black-and-tan, solid black, chocolate, and blue coats.


3 chihuahua puppies

When a Merle Chihuahua is bred with a cream or sable-colored Chihuahua, their litter may contain ghost Merles. Ghost Merles, otherwise known as hidden or cryptic Merles, carry the Merle gene but don’t display the Merle coat pattern.

Pet owners cannot tell that their ghost Merle is a Merle Chihuahua at all. If the ghost Merle is bred with another Merle accidentally, the double Merle litter will be stuck with nasty health issues.

Therefore, if you suspect your Chihuahua may be a ghost Merle, you should have him or she genetically tested.

If you can register your ghost Merle Chihuahua, you should indicate that the Chihuahua is Merle, even if he or she has barely visible or no markings.

Doing so ensures that you are being an ethical Chihuahua owner and that you are taking responsibility for your Chihuahua’s unique trait.

Do Merle Chihuahuas Have Health Problems?

A Chihuahua with blue eyes will undoubtedly have an increased sensitivity to sunlight. The Merle gene modifier also results in other undesired health issues for this breed of Chihuahua as well. For example, these Chihuahuas are far more likely than other breeds and types to develop hearing and vision problems.

Do Merle Chihuahuas Require More Attention?

Chihuahuas, in general, are considered needy dogs, so the same applies to Merle Chihuahuas as well. They enjoy attention, being pet, and being played with. This has a lot to do with their hyperactive personalities.

What Is a Blue Chihuahua?

A blue Chihuahua is simply a Chihuahua that is just another color. Breeding a Blue Chihuahua is very difficult because the gene with the color is recessive. So, the dominant genes take over. So, it is very rare to have a Chihuahua puppy that has a full blue coat.

Why Is a Merle Chihuahua Controversial?

The Merle Chihuahua is so controversial not because of its beautiful color pattern but because of how the Chihuahua is bred to achieve that pattern. The Chihuahua does not have M (merle), and all Chihuahuas should have MM (non-merle). The president of the Australian Shepherd Health & Genetics Institute says, “the merle gene is not one that mutates spontaneously from the normal, non-merle version with any frequency.”

How is Merle Inherited in the Chihuahua Dog Breed?

Merle is simply a genetic pattern that is in a dog’s coat. The Merle gene is responsible for creating mottled patches of color in a solid coat along with blue eyes or odd-colored eyes. The gene can also affect the dog’s skin pigment as well.

What Does the Kennel Club Say About Merle Chihuahuas?

The Kennel Club definitely has a position when it comes to the Merle Chihuahua. Merle is sometimes considered an undesirable color within the Chihuahua dog breed. For this reason, the Kennel Club will no longer allow a dog owner to register a Merle Chihuahua if there is no documented evidence of the color being well-established over a sustained period of time. There are only certain breeds that they will accept Merle registrations for. As we stated above, the American Kennel Club does believe that there are Merle breeds that are more ethical.


merle chihuahua

The history and dialogue surrounding Merle Chihuahuas are just as compelling as their stunning coat patterns.

If your furry best friend happens to be Merle, consider yourself blessed! At the end of the day, all that matters is the adorable little Chihuahua curled up next to you.

Long Haired Chihuahua Facts
Top Questions (and Answers) Asked About Chihuahuas

Michael Fettel

Thursday 17th of September 2020

Didn't even know that Merle was a thing till someone told my my Jack was worth a lot of money .


Thursday 17th of September 2020

Yep a lot of people don't know since they are kind of rare.

Brad Henderson

Friday 31st of July 2020

I have a Merle male that just fathered two puppies with a red and white and both are merles. He has one blue eye and we’re anxious to see what color eyes the puppies have. One male and one female.


Friday 31st of July 2020

I'd be curious to see what they end up looking like too Brad.


Thursday 9th of July 2020

I have beautiful Merle puppies from time to time. Look me up on Facebook. Tiny Paws And Tails. I’ve been breeding chi’s for 8 plus years now!:)

Stephen Arthur Nelson

Friday 12th of June 2020

I have a merle chi thats 3 years old and have recently put down a deposit on a sister of his from same mother but she has 2 blue eyes and im kinda concerned. Is there a chance that a double merle can be healthy i habe read alot on both yes and no. Thanks

Courtney Talbot

Monday 27th of July 2020

@Stephen Arthur Nelson, 2 blue eyes is not double merle. Double is when you breed 2 merles together, that can produce unhealthy pups. Two blue eyes is fine no worries whats so ever!


Saturday 13th of June 2020

It's possible that she won't be healthy but then that's a possibility with any dog. Does the breeder have a health guarantee? Many of them do.


Thursday 11th of June 2020

I have a “lilac Merle” chihuahua. Blue eyes.


Thursday 11th of June 2020

That sounds like a gorgeous combo Desiree!